[ensembl-dev] Problem with genome_member_copy (Compara).

[Francesco Lamanna]

Hi all,

when I try to run the protein tree pipeline (v91) using the core Human and
Chicken genomes I get the following error message:

mysql> SELECT * from msg;
+-------------+-------------------------------+----------------+--------+---------+-----------+---------------------+-------+--------------+------------------------------------------------------------------------------------+----------+
| analysis_id | logic_name                    | log_message_id | job_id |
role_id | worker_id | when_logged         | retry | status       |
msg
| is_error |
+-------------+-------------------------------+----------------+--------+---------+-----------+---------------------+-------+--------------+------------------------------------------------------------------------------------+----------+
|           9 | copy_ncbi_table               |              1 |      5
|       3 |         4 | 2018-01-10 16:40:13 |     0 | WRITE_OUTPUT |
Successfully copied 1646504 'ncbi_taxa_node'
rows                                  |        0 |
|           9 | copy_ncbi_table               |              2 |      6
|       4 |         3 | 2018-01-10 16:42:04 |     0 | WRITE_OUTPUT |
Successfully copied 2504391 'ncbi_taxa_name'
rows                                  |        0 |
|          10 | populate_method_links_from_db |              3 |      7
|       6 |         6 | 2018-01-10 16:43:44 |     0 | WRITE_OUTPUT |
Successfully copied 18 'method_link'
rows                                          |        0 |
|          25 | genome_member_copy            |              4 |     13
|      11 |        11 | 2018-01-10 16:47:49 |     0 | FETCH_INPUT  |
ParamError: value for param_required('reuse_db') is required and has to be
defined |        1 |
|          25 | genome_member_copy            |              5 |     14
|      12 |        12 | 2018-01-10 16:47:49 |     0 | FETCH_INPUT  |
ParamError: value for param_required('reuse_db') is required and has to be
defined |        1 |
+-------------+-------------------------------+----------------+--------+---------+-----------+---------------------+-------+--------------+------------------------------------------------------------------------------------+----------+

I have no clue about what to put in the 'reuse_db' parameter (nor could I
find any information in the compara docs).

Can anyone please help me to solve this issue?

Thanks,
Francesco.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20180110/64a49d50/attachment.html>