[ensembl-dev] Problem with genome_member_copy (Compara).
Francesco Lamanna
francesco.lamanna at gmail.com
Wed Jan 10 16:06:24 GMT 2018
Hi all,
when I try to run the protein tree pipeline (v91) using the core Human and
Chicken genomes I get the following error message:
mysql> SELECT * from msg;
+-------------+-------------------------------+----------------+--------+---------+-----------+---------------------+-------+--------------+------------------------------------------------------------------------------------+----------+
| analysis_id | logic_name | log_message_id | job_id |
role_id | worker_id | when_logged | retry | status |
msg
| is_error |
+-------------+-------------------------------+----------------+--------+---------+-----------+---------------------+-------+--------------+------------------------------------------------------------------------------------+----------+
| 9 | copy_ncbi_table | 1 | 5
| 3 | 4 | 2018-01-10 16:40:13 | 0 | WRITE_OUTPUT |
Successfully copied 1646504 'ncbi_taxa_node'
rows | 0 |
| 9 | copy_ncbi_table | 2 | 6
| 4 | 3 | 2018-01-10 16:42:04 | 0 | WRITE_OUTPUT |
Successfully copied 2504391 'ncbi_taxa_name'
rows | 0 |
| 10 | populate_method_links_from_db | 3 | 7
| 6 | 6 | 2018-01-10 16:43:44 | 0 | WRITE_OUTPUT |
Successfully copied 18 'method_link'
rows | 0 |
| 25 | genome_member_copy | 4 | 13
| 11 | 11 | 2018-01-10 16:47:49 | 0 | FETCH_INPUT |
ParamError: value for param_required('reuse_db') is required and has to be
defined | 1 |
| 25 | genome_member_copy | 5 | 14
| 12 | 12 | 2018-01-10 16:47:49 | 0 | FETCH_INPUT |
ParamError: value for param_required('reuse_db') is required and has to be
defined | 1 |
+-------------+-------------------------------+----------------+--------+---------+-----------+---------------------+-------+--------------+------------------------------------------------------------------------------------+----------+
I have no clue about what to put in the 'reuse_db' parameter (nor could I
find any information in the compara docs).
Can anyone please help me to solve this issue?
Thanks,
Francesco.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20180110/64a49d50/attachment.html>
More information about the Dev
mailing list