[ensembl-dev] VEP segmentation fault error

Rehaman ensemblfan at gmail.com
Tue Feb 27 19:04:24 GMT 2018


Dear Ensembl team,

I am running VEP for GRCh37 assembly and as you mentioned some of alleles
may not get Allele frequencies and so I want to test custom annotation optio

I tried running vep with example vcf and getting "Segmentation Fault"
error.

Command:

*vep -i [vepdir]/examples/homo_sapiens_GRCh37.vcf -cache --ASSEMBLY GRCh37
--fork 4 custom
gnomad.exomes.r2.0.1.sites.vcf.gz,gnomADg,vcf,exact,0,AF_AFR,AF_AMR,AF_ASJ,AF_EAS,AF_FIN,AF_NFE,AF_OTH*

Could you please give me suggestions on this.

Thanks & Regards
Fazulur Rehaman
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20180228/689df66a/attachment.html>


More information about the Dev mailing list