[ensembl-dev] Installation problem

[Mahmood Naderan]

Hello,
I am using the API on a system which is fine. However, as I tried to build
the API on another system, I faced some problems. I think I followed all
steps, but my script fails to work. Please see the following output


mahmood at qemu:~$ echo $PERL5LIB
:/home/mahmood/src/bioperl-1.6.1:/home/mahmood/src/ensembl/modules:/home/mahmood/src/ensembl-compara/modules:/home/mahmood/src/ensembl-variation/modules:/home/mahmood/src/ensembl-funcgen/modules:/home/mahmood/src/Bio-DB-HTS/lib:/home/mahmood/src/Bio-DB-HTS/blib/arch/auto/Bio/DB/HTS/:/home/mahmood/src/Bio-DB-HTS/blib/arch/auto/Bio/DB/HTS/Faidx:/home/mahmood/src/bioperl-1.6.1:/home/mahmood/src/ensembl/modules:/home/mahmood/src/ensembl-compara/modules:/home/mahmood/src/ensembl-variation/modules:/home/mahmood/src/ensembl-funcgen/modules:/home/mahmood/src/Bio-DB-HTS/lib:/home/mahmood/src/Bio-DB-HTS/blib/arch/auto/Bio/DB/HTS/:/home/mahmood/src/Bio-DB-HTS/blib/arch/auto/Bio/DB/HTS/Faidx
mahmood at qemu:~$ echo $HTSLIB_DIR
/home/mahmood/src/htslib
mahmood at qemu:~$ perl test-new.pl genes.txt
Can't locate DBI.pm in @INC (you may need to install the DBI module) (@INC
contains: /home/mahmood/src/bioperl-1.6.1 /home/mahmood/src/ensembl/modules
/home/mahmood/src/ensembl-compara/modules
/home/mahmood/src/ensembl-variation/modules
/home/mahmood/src/ensembl-funcgen/modules /home/mahmood/src/Bio-DB-HTS/lib
/home/mahmood/src/Bio-DB-HTS/blib/arch/auto/Bio/DB/HTS/
/home/mahmood/src/Bio-DB-HTS/blib/arch/auto/Bio/DB/HTS/Faidx
/home/mahmood/src/bioperl-1.6.1 /home/mahmood/src/ensembl/modules
/home/mahmood/src/ensembl-compara/modules
/home/mahmood/src/ensembl-variation/modules
/home/mahmood/src/ensembl-funcgen/modules /home/mahmood/src/Bio-DB-HTS/lib
/home/mahmood/src/Bio-DB-HTS/blib/arch/auto/Bio/DB/HTS/
/home/mahmood/src/Bio-DB-HTS/blib/arch/auto/Bio/DB/HTS/Faidx /etc/perl
/usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1
/usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5
/usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22
/usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at
/home/mahmood/src/ensembl/modules/Bio/EnsEMBL/DBSQL/DBConnection.pm line 74.
BEGIN failed--compilation aborted at
/home/mahmood/src/ensembl/modules/Bio/EnsEMBL/DBSQL/DBConnection.pm line 74.
Compilation failed in require at
/home/mahmood/src/ensembl/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm line 69.
BEGIN failed--compilation aborted at
/home/mahmood/src/ensembl/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm line 69.
Compilation failed in require at
/home/mahmood/src/ensembl/modules/Bio/EnsEMBL/Registry.pm line 137.
BEGIN failed--compilation aborted at
/home/mahmood/src/ensembl/modules/Bio/EnsEMBL/Registry.pm line 137.
Compilation failed in require at test-new.pl line 1.
BEGIN failed--compilation aborted at test-new.pl line 1.
mahmood at qemu:~$ head -n 3 test-new.pl
use Bio::EnsEMBL::Registry;
use Bio::SeqIO;
use File::Basename;
mahmood at qemu:~$



Which step did I miss? Any thought?

Regards,
Mahmood
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