[ensembl-dev] Location of APPRIS and TSL in public mysql database for each Ensembl transcript

Alexander Drew a.drew at garvan.org.au
Mon May 8 06:48:59 BST 2017


Hello,

I am trying to retrieve the flags (specifically APPRIS and Transcript support level) for Ensembl transcript Ids from the public mySQL database. I am having trouble locating this information in the database schema. I have found the reference for this in the various databases for the different genome builds, but cannot locate the actual data.

I am trying to grab the same data that is populated in the transcript table 'flags' column when viewing a gene in the Ensembl website (eg. http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000206195;r=22:15784959-15829984).

can you help me find this data in the mySQL database?

Thank you,

Alex Drew.
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