[ensembl-dev] Ensembl API v84 breaks at Bio::EnsEMBL::Registry::get_adaptor?

[John M.C. Ma]

Hi,

Today I attempted to run some Ensembl API code that I ran before, and
it breaks. Since it's practically the first few lines after
declaration, I'd cite them here:

my $registry = 'Bio::EnsEMBL::Registry';
$registry->load_registry_from_db(
    -host => 'useastdb.ensembl.org', # alternatively 'useastdb.ensembl.org'
    -port => 5306,
    -user => 'anonymous',
    -db_version => '84'
);

my $transcript_adaptor = $registry->get_adaptor( 'Mouse', 'Core',
'Transcript' );

And the error is:

-------------------- WARNING ----------------------
MSG: Mouse is not a valid species name (check DB and API version)
FILE: Bio/EnsEMBL/Registry.pm LINE: 1327
CALLED BY: Bio/EnsEMBL/Registry.pm  LINE: 1102
Date (localtime)    = Thu Oct  6 13:07:54 2016
Ensembl API version = 84
---------------------------------------------------

-------------------- EXCEPTION --------------------
MSG: Can not find internal name for species 'Mus_musculus'
STACK Bio::EnsEMBL::Registry::get_adaptor
Y:\ensembl\modules/Bio/EnsEMBL/Registry.pm:1104
STACK toplevel [my script]
Date (localtime)    = Thu Oct  6 13:07:54 2016
Ensembl API version = 84
---------------------------------------------------


Changing 'Mouse' to 'mus_musculus' or 'Mus_musculus' have no effect.

Does this have anything to do with e86's rollout today?

Cheers,

John MC Ma
Department of Lymphoma/ Myeloma
University of Texas MD Anderson Cancer Center
Houston, Texas, United States