[ensembl-dev] Transcript names in the cache

João Eiras joao.eiras at gmail.com
Tue Oct 4 17:31:24 BST 2016


On 3 October 2016 at 17:34, Will McLaren <wm2 at ebi.ac.uk> wrote:
> This external transcript name was not used by the VEP code, so it falls in
> the unnecessary category, hence it is stripped out. You can see which fields
> get stripped in the clean_transcript() subroutine of VEP.pm:
>
> https://github.com/Ensembl/ensembl-variation/blob/master/modules/Bio/EnsEMBL/Variation/Utils/VEP.pm#L4907-L4936
>

Ok, thanks for the info. But I see clean_gene leaves _gene_symbol in
place. So there's that.

Thank you for your time.




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