[ensembl-dev] Error messages when using the Variation API

Johanne Håøy Horn johannhh at ifi.uio.no
Mon May 23 13:44:00 BST 2016


Hello,

I attach a list of SNPs (rsids1.txt), the output when using hg38 (out_0_rsids1.txt) and hg19 (out_0_rsids1_hg19.txt). The local vcf files were the same for the generation of both out files, as far as I know. I also attach the script used again.

hg38 got 7233 LD variants, hg19 got 7246.

Best,
Johanne

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: expandSNPs.pl
Type: text/x-perl-script
Size: 2493 bytes
Desc: expandSNPs.pl
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment.bin>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment.htm>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: out_0_rsids1.txt
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment.txt>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment-0001.htm>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: rsids1.txt
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment-0001.txt>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment-0002.htm>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: out_0_rsids1_hg19.txt
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment-0002.txt>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160523/a223d826/attachment-0003.htm>


More information about the Dev mailing list