[ensembl-dev] Fwd: Ensembl VEP: FASTA gzip to bgzip conversion failed

Platon workaccount platon.work at gmail.com
Tue Mar 22 12:04:27 GMT 2016

---------- Forwarded message ---------
From: Platon workaccount <platon.work at gmail.com>
Date: вт, 22 мар. 2016 г. в 14:58
Subject: Ensembl VEP: FASTA gzip to bgzip conversion failed
To: <dev at ensembl.org>


Full API end dependencies are installed (bioperl-live, ensembl,
ensembl-compara, ensembl-variation, ensembl-funcgen; tabix; DBI,
DBD::mysql); environment is set up
my $API_VERSION = 84

Error of converting sequence data:

? 28
- downloading Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz
- converting sequence data to bgzip format
Going to run:
This may take some time and will be removed when files are provided in
bgzip format
/bin/bash: ./biodbhts/scripts/convert_gz_2_bgz.sh: No such file or directory
FASTA gzip to bgzip conversion failed:
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