[ensembl-dev] Retrieving gene coordinates
Cristina Yenyxe Gonzalez Garcia
cyenyxe at ebi.ac.uk
Mon Jul 25 18:38:02 BST 2016
Hello,
We are exploring possible ways to retrieve gene coordinates to optimize
certain queries at the European Variation Archive (EVA). We haven't
managed to find an Ensembl REST endpoint to get this information, is
there one available? Would it work for any species, including those in
Ensembl Genomes (e.g. sorghum bicolor or strongyloides ratti)?
Otherwise, what would be the best option? Parsing the GFF files for
each species?
The last idea we can come up with is extracting this information from
the VEP cache, is that even possible? That would help to reduce the
number of our data dependencies, since we will always have one for the
species supported in our variant browser.
Thanks,
Cristina
More information about the Dev
mailing list