[ensembl-dev] problem importing GenBank file into local core DB

Dan Staines dstaines at ebi.ac.uk
Thu Jul 7 09:52:35 BST 2016


Hi Susan,

Ensembl does support origin-spanning features - we have these in Ensembl
Bacteria. Can you please share with me a small piece of code showing how
you are storing the data so we can see what the problem might be?

Out of interest, which prokaryotic genomes are you importing? There are
over 40,000 in Ensembl Bacteria which come from EMBL/GenBank so its
possible that the genomes you are interested in are already present.

Thanks,

Dan.

-- 
Dan Staines, PhD
Genomics Technology Infrastructure Coordinator
EMBL-EBI, Wellcome Trust Genome Campus
Cambridge CB10 1SD, UK
Tel: +44-(0)1223-492507




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