[ensembl-dev] Bug?? Biomart mapping of Mouse ID to MGI ids

[mag]

Hi Ashok,

MGI mappings, like HGNC mappings, are direct mappings we import directly 
from the source.
According to this database, both Ugt2a1 and Ugt2a2 map to the Ensembl gene.
http://www.informatics.jax.org/marker/MGI:2149905
http://www.informatics.jax.org/marker/MGI:3576095

Looking at the gene models, there is an overlap with ENSMUSG00000106677, 
which corresponds to Ugt2a1.
I suspect MGI:2149905 needs to be updated to link to ENSMUSG00000106677 
instead of ENSMUSG00000029268, but we cannot change it at our end.
If you have any experimental evidence to correct those mappings, please 
contact MGI (mgi-help at jax.org) to let them know.


Regards,
Magali

On 03/09/2015 21:34, Ragavendran, Ashok wrote:
> Hello,
>      I have come upon a subsequent bug where there is an erroneous
> mapping of Ensembl Mouse ID to the corresponding MGI:ID using BioMart (
> both in bioconductor and the Ensembl web interface). Please let me know
> if I am missing something in this regard. Correct mapping should be only
> to 3576095 and not to 2149905.
>
>      Cheers
>      Ashok
>
> ===== Text based Results from querying the gene id  ENSMUSG00000029268
> =======
>
> Ensembl Gene ID    Status (gene)    MGI ID    MGI symbol
> ENSMUSG00000029268    KNOWN    MGI:2149905    Ugt2a1
> ENSMUSG00000029268    KNOWN    MGI:3576095    Ugt2a2
>