[ensembl-dev] VEP: convert_cache error when using --species all --version all

Cyriac Kandoth kandoth at cbio.mskcc.org
Sat Oct 31 22:58:57 GMT 2015


I normally something like this, after downloading a bunch of caches... and
it works fine:
perl convert_cache.pl --species homo_sapiens,mus_musculus --version
82_GRCh37,82_GRCh38,82_GRCm38 --dir $VEP_DATA

The documentation states we can use "all" to do all caches found. But
here's what happen when I do:
perl convert_cache.pl --species all --version all --dir $VEP_DATA

2015-10-31 18:54:45 - Processing htslib
2015-10-31 18:54:45 - Processing version test
Can't use an undefined value as an ARRAY reference at convert_cache.pl line
176.

Let me know if you need more information to debug.

Cheers!

~Cyriac
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