[ensembl-dev] Can't call method "genome_db" when use Ensembl_79

[Matthieu Muffato]

Hi Jialin,

It looks like you are calling fetch_all_by_Member_paired_species() and 
the "member" object you are giving to the function is actually not defined.
The problem thus happens before calling the function. Perhaps the gene 
you were expecting to find is not there any more ? or its name has changed ?

Can you share that part of the script ?

Matthieu

On 19/03/15 14:19, Liu Jialin wrote:
> Dear Ensemble team:
>
>
> After ten minutes when I start run my script to query duplicates using
> Ensembl_79, the system report a mistake:
>
> Can't call method "genome_db" on an undefined value at
> /software/Development/Ensembl_API/79/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/HomologyAdaptor.pm
> line 123.
>
>
> However, when I use Ensembl_78, the script run normally, no such error
> report.
>
> Any suggestion?
>
>
> Jialin
>