[ensembl-dev] question regarding refseq exons retreival

[Duarte Molha]

Dear developers

I have a script that I wrote (in attachment)  that gets me the refseq exons
for give input gene

However when I use this code using the gene ASXL1 as an example is:

test_query.pl ASXL1

QueryName feature_type common_name Biotype id chr start end strand
ASXL1 Exon ASXL1 protein_coding NM_001164603.1.1 chr20 30946147 30946635 +
ASXL1 Exon ASXL1 protein_coding NM_001164603.1.2 chr20 30954187 30954269 +
ASXL1 Exon ASXL1 protein_coding NM_001164603.1.3 chr20 30955530 30955532 +
ASXL1 Exon ASXL1 protein_coding NM_001164603.1.4 chr20 30956818 30956926 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.5 chr20 31015931 31016051 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.6 chr20 31016128 31016225 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.7 chr20 31017141 31017234 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.8 chr20 31017704 31017856 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.9 chr20 31019124 31019287 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.10 chr20 31019386 31019482 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.11 chr20 31020683 31020788 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.12 chr20 31021087 31021720 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.13 chr20 31022235 31027122 +


As you can see, I am missing some of the exons for transcript NM_015338.5
In this case, the 1st 3 exons of transcript  NM_015338.5 are identical to
NM_001164603.1, but I would expect to have them listed as :

ASXL1 Exon ASXL1 protein_coding NM_015338.5.1 chr20 30946147 30946635 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.2 chr20 30954187 30954269 +
ASXL1 Exon ASXL1 protein_coding NM_015338.5.3 chr20 30955530 30955532 +

Can you tell me what is wrong with my approach and how I can retrieve the
missing data?

Best regards

Duarte
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