[ensembl-dev] VEP ClinVar information
Guillermo Marco Puche
guillermo.marco at sistemasgenomicos.com
Mon Mar 2 14:06:33 GMT 2015
Dear devs,
I'm looking forward to retrieve ClinVar information and add it to VEP
annotation. From my understanding I should be able to retrieve "Clinical
significance" and "ClinVar Rating".
I've been looking the Varation API, and I'm confused. I guess for
significance I should use
Bio::EnsEMBL::Variation::Utils::VEP::get_clin_sig() or
Bio::EnsEMBL::Variation::VariationFeature::get_all_clinical_significance_states().
What about ClinVar rating? Is it possible to retrieve it from API?
Thanks!
Regards,
Guillermo.
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