[ensembl-dev] VEP ClinVar information

Guillermo Marco Puche guillermo.marco at sistemasgenomicos.com
Mon Mar 2 14:06:33 GMT 2015


Dear devs,

I'm looking forward to retrieve ClinVar information and add it to VEP 
annotation. From my understanding I should be able to retrieve "Clinical 
significance" and "ClinVar Rating".

I've been looking the Varation API, and I'm confused. I guess for 
significance I should use 
Bio::EnsEMBL::Variation::Utils::VEP::get_clin_sig() or 
Bio::EnsEMBL::Variation::VariationFeature::get_all_clinical_significance_states().

What about ClinVar rating? Is it possible to retrieve it from API?

Thanks!

Regards,
Guillermo.


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