[ensembl-dev] vep warning when using cache
Guillermo Marco Puche
guillermo.marco at sistemasgenomicos.com
Wed Jun 10 15:40:58 BST 2015
Dear devs,
I'm experiencing the following warnings when using vep local cache with
variant_effect_predictor script:
Argument "-/C" isn't numeric in numeric eq (==) at /share/apps/src/ensembl_80-variation/modules/Bio/EnsEMBL/Variation/Utils/VEP.pm line 6218.
Use of uninitialized value in split at /share/apps/src/ensembl_80-variation/modules/Bio/EnsEMBL/Variation/Utils/VEP.pm line 6223.
If no cache is used warnings disappear.
Input VCF: example_GRCh38.vcf (inside
https://github.com/Ensembl/ensembl-tools/archive/release/80.zip)
Cache downloaded from:
ftp://ftp.ensembl.org/pub/release-80/variation/VEP/homo_sapiens_vep_80_GRCh38.tar.gz
Best regards,
Guillermo.
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