[ensembl-dev] Release 81 installation problems

[Balanis, Nikolas G.]

Hello I am looking for the solution to this problem. I googled and looked on throught the archives but I am not sure how to fix this. I am installing vep based on the instructions from https://github.com/ckandoth/vcf2maf


export VEP_PATH=~/vep
export VEP_DATA=~/.vep


mkdir $VEP_PATH; cd $VEP_PATH
curl -LO https://github.com/Ensembl/ensembl-tools/archive/release/81.tar.gz
tar -zxf 81.tar.gz --starting-file variant_effect_predictor --transform='s|.*/|./|g'

rsync -zvh rsync://ftp.ensembl.org/ensembl/pub/release-81/variation/VEP/homo_sapiens_vep_79_GRCh{37,38}.tar.gz $VEP_DATA
cat $VEP_DATA/*.tar.gz | tar -izxf - -C $VEP_DATA


cd $VEP_PATH
perl INSTALL.pl --AUTO af --SPECIES homo_sapiens --ASSEMBLY GRCh37 --DESTDIR $VEP_PATH --CACHEDIR $VEP_DATA
perl INSTALL.pl --AUTO af --SPECIES homo_sapiens --ASSEMBLY GRCh38 --DESTDIR $VEP_PATH --CACHEDIR $VEP_DATA


I get this warning message below when I perform either of the last 2 instructions.  I can't
seem to figure this out. Everything should be release 81 so I am quite confused.
What are the steps to fix this?

For homo_sapiens_core_80_38 there is a difference in the software release (81) and the database release (80). You should update one of these to ensure that your script does not crash.
For homo_sapiens_variation_80_38 there is a difference in the software release (81) and the database release (80). You should update one of these to ensure that your script does not crash.


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