[ensembl-dev] DB connection and panic: sv_setpvn error
陈岗
danielchen06 at gmail.com
Mon May 26 07:59:55 BST 2014
Hi All
Our mirror has database connection and sv_setpvn errors (version 75).
The public-plugins/mirror/conf/ini-files/DEFAULTS.ini has been changed, but
it doesn't work. The DB connection is not our real DB IP, user name and
password.
And I have no idea for the second error, about panic: sv_setpvn.
The error massage:
First:
Executing perl startup file
Retrieving conf from /usr/local/Ensembl/ensembl-webcode/conf/config.packed
:: Auto-selecting build 546 core DB as:
anonymous at drosophila_melanogaster_core_75_546:ensembldb.ensembl.org:5306
Could not connect to database drosophila_melanogaster_core_75_546 as user
anonymous using
[DBI:mysql:database=drosophila_melanogaster_core_75_546;host=
ensembldb.ensembl.org;port=5306] as a locator:
DBI connect('database=drosophila_melanogaster_core_75_546;host=
ensembldb.ensembl.org;port=5306','anonymous',...) failed: Can't connect to
MySQL server on 'ensembldb.ensembl.org' (111) at
/usr/local/Ensembl/ensembl/modules/Bio/EnsEMBL/DBSQL/DBConnection.pm line
262.
Syntax error on line 152 of
/usr/local/Ensembl/ensembl-webcode/conf/httpd.conf:
Second:
panic: sv_setpvn called with negative strlen -1 at
/usr/local/Ensembl/ensembl/modules/Bio/EnsEMBL/Utils/Exception.pm line
420.\n
Best regards
--
Gang Chen
TILSI
Taicang Institute For Life Science Information
Address: A2/162, Renmin South Road, Taicang, 215400, Jiangsu Province,
P.R.China
Phone:(+86)512-82782588
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20140526/bf60514f/attachment.html>
More information about the Dev
mailing list