[ensembl-dev] Streaming BAM files in IGV
Genomeo Dev
genomeodev at gmail.com
Thu Mar 6 18:13:37 GMT 2014
Hi,
(1)
I am trying to use IGV browser to load bam files form this location:
ftp://ftp.ensembl.org/pub/release-75/data_files/homo_sapiens/GRCh37/rnaseq/
But I am getting an error message that not possible to establish SOCKS
proxy connection.
I have found that igv mention that 'for .bam, .tdf, and indexed file
formats the server must support byte-range requests.' (
http://www.broadinstitute.org/igv/loaddata)
I was wondering whether there is any thing from the ensembl server side
that is causing this error.
Thanks.
(2)
I want to load annotation into IGV genome browser from
ftp://ftp.ensembl.org/pub/release-75/gtf/homo_sapiens/Homo_sapiens.GRCh37.75.gtf.gz
But the file is too large to handle at once. Any advice from the Ensembl
browser team on how I should be conducting this operation?
Thanks,
--
G.
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