[ensembl-dev] Difference in location data for a dbsnp id.

[Rohan M]

Hi All,

  I'm using the code snippet given at by ensemble api tutorial, under the
section - "Variations, Flanking sequences and Genes"
http://asia.ensembl.org/info/docs/api/variation/variation_tutorial.html
 I added api version line to the original code and I'm running the script
for dbsnp ID 'rs3064744'

Here is the output -

The API version used is 72
rs3064744,-/TA,NMD_transcript_variant,5_prime_UTR_variant,intron_variant,downstream_gene_variant,upstream_gene_variant,feature_elongation,regulatory_region_variant,TATATATATA[-/TA]AGTAGGAGAG,2:234668895-234668894,,ENSG00000242515,,ENSG00000244474,,ENSG00000167165,,ENSG00000243135,,ENSG00000167165,,ENSG00000178836,,ENSG00000167165,,ENSG00000178836,,ENSG00000167165,,ENSG00000244122,,ENSG00000244474,,ENSG00000241635,,ENSG00000240224,,ENSG00000167165,,ENSG00000178836,,ENSG00000241635,,ENSG00000242366,,ENSG00000242515,,ENSG00000178836,,ENSG00000241119,,ENSG00000167165


Why does the location retrieved ( 2:234668895-234668894 ) is not matching
with the one present on the web?
On the web interface it says - Chromosome *2*: between *234668880* and
*234668881*

http://asia.ensembl.org/Homo_sapiens/Variation/Summary?r=2:234668381-234669380;v=rs3064744;vdb=variation;vf=2706024

Could somebody explain what is wrong?

Thanks,

--
Ron
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