[ensembl-dev] Variation features named TMP_ESP_1_1693469 and similar???
Jeremy Henty
jh13 at sanger.ac.uk
Wed Jan 8 17:06:41 GMT 2014
Anja Thormann wrote:
> rs# are assigned by dbSNP from where we import most of our variation
> data. But we have many more source from which we import data. One of
> these sources is the NHLBI GO Exome Sequencing Project (ESP). Not
> all variants from ESP have a rs#. In such a case we generate a
> temporary ID. For ESP data it is: TMP_ESP_CHROM_POS. The information
> is taken from a VCF file which is provided by ESP. Let me know if
> you need further clarifications.
Thanks. We shall display all the features but only give a URL for rs#.
Jeremy
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