[ensembl-dev] Fetching genomic alignments with Ensembl REST API

Greg Slodkowicz gregs at ebi.ac.uk
Fri Jan 3 00:29:58 GMT 2014


> 504 means "The server was acting as a gateway or proxy and did not receive
> a timely response from the upstream server". So your request could not be
> full-filled in a reasonable amount of time. I would guess that this region
> is in-fact quite a complex request. Can you shrink down your requested
> region? We use Amazon's ELB as a front-end which has a default timeout of
> 60 seconds. So unless you can shrink the requested amount of data down
> there's no way the beta service can return a response.
>

Hi Andy,
Thanks for the quick reply.  What I'm trying to fetch is a single gene so I
probalby shouldn't split it up but I can see that the 'blocks' endpoint
works just fine, I should be able to piece together an alignment from these.

Best,
Greg

-- 
Greg Slodkowicz
PhD student, Nick Goldman group
European Bioinformatics Institute (EMBL-EBI)
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