[ensembl-dev] VM 75

Genomeo Dev genomeodev at gmail.com
Fri Feb 28 10:26:32 GMT 2014


Hi,

I just loaded the new release VM 75.

~/verify-installation worked fine.

But:

use Bio::EnsEMBL::Registry;
my $registry = 'Bio::EnsEMBL::Registry';
my $gene_adaptor  = $registry->get_adaptor( 'Human', 'Core', 'Gene' );

gives me this error:

-------------------- WARNING ----------------------
MSG: Human is not a valid species name (check DB and API version)
FILE: Bio/EnsEMBL/Registry.pm LINE: 1198
CALLED BY: Bio/EnsEMBL/Registry.pm  LINE: 983
Date (localtime)    = Fri Feb 28 10:20:41 2014
Ensembl API version = 75
---------------------------------------------------

-------------------- EXCEPTION --------------------
MSG: Can not find internal name for species 'Human'
STACK Bio::EnsEMBL::Registry::get_adaptor
/home/ensembl/ensembl-api-folder/ensembl/modules/Bio/EnsEMBL/Registry.pm:985
STACK toplevel ./fetch_ensembl_genes_v3b.pl:71
Date (localtime)    = Fri Feb 28 10:20:41 2014
Ensembl API version = 75
---------------------------------------------------

Any suggestions please?

-- 
G.
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