[ensembl-dev] VM 75
Genomeo Dev
genomeodev at gmail.com
Fri Feb 28 10:26:32 GMT 2014
Hi,
I just loaded the new release VM 75.
~/verify-installation worked fine.
But:
use Bio::EnsEMBL::Registry;
my $registry = 'Bio::EnsEMBL::Registry';
my $gene_adaptor = $registry->get_adaptor( 'Human', 'Core', 'Gene' );
gives me this error:
-------------------- WARNING ----------------------
MSG: Human is not a valid species name (check DB and API version)
FILE: Bio/EnsEMBL/Registry.pm LINE: 1198
CALLED BY: Bio/EnsEMBL/Registry.pm LINE: 983
Date (localtime) = Fri Feb 28 10:20:41 2014
Ensembl API version = 75
---------------------------------------------------
-------------------- EXCEPTION --------------------
MSG: Can not find internal name for species 'Human'
STACK Bio::EnsEMBL::Registry::get_adaptor
/home/ensembl/ensembl-api-folder/ensembl/modules/Bio/EnsEMBL/Registry.pm:985
STACK toplevel ./fetch_ensembl_genes_v3b.pl:71
Date (localtime) = Fri Feb 28 10:20:41 2014
Ensembl API version = 75
---------------------------------------------------
Any suggestions please?
--
G.
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