[ensembl-dev] new VEP REST endpoint

Michael Heuer heuermh at gmail.com
Wed Dec 10 18:05:12 GMT 2014


I'm finally getting the chance to update some code that depends on the VEP
REST endpoint from the beta version to the current production version and
have a few questions.  Looking specifically at this example


Under transcript_consequences in this example somatic is "1,1,1".  What is
this supposed to represent?  There are three colocated_variants, so I
assume this is referring to that.

Under transcript_consequences allele_string="A/T" is now represented as
variant_allele="T".  It would be useful to have a similar

Then in this table there are a few cases documented where VEP isn't using
the correct SO term:


Have these been addressed?

Thank you,

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