[ensembl-dev] Error when using variation set adaptor
Nazmiye Uzun
n.uzun at mail.cryst.bbk.ac.uk
Thu Dec 4 13:08:17 GMT 2014
Dear developers
I am trying to test below code snippet provided on the
variation_tutorial page to display attributes of the variations in a
particular variation set. Here's a section of the code from the
following page;
http://www.ensembl.org/info/docs/api/variation/variation_tutorial.html#variation_sets
my $vs_adaptor = $registry->get_adaptor('human','variation','variationset');
my $vs = $vs_adaptor->fetch_by_short_name('ph_variants');
my $limit = 10;
my $fetched = 0;
my $it = $vs->get_Variation_Iterator();
# Get the first 10 examples and print some data from them
while ($fetched < $limit && $it->has_next()) {
# Print the name of the variation
my $var = $it->next();
printf("\t\%s has been found to be associated with:\n",$var->name());
#
# Do more
#
$fetched++;
}
However, I receive the following error:
DBD::mysql::st execute failed: Unknown column 'v.display' in 'where
clause' at
-----/src/ensembl-variation/modules/Bio/EnsEMBL/Variation/DBSQL/VariationAdaptor.pm line
1173.
The version of the API I'm using is 77.
I appreciate any input. Thanks for the help in advance.
Regards
Naz
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