[ensembl-dev] Dev Digest, Vol 39, Issue 26

[Denise Carvalho-Silva]

Hi Ed,

We do not need to change the default configuration.

You can just search for a gene, go to the Location tab, click on Region
Comparison at the left hand side, click on Select species or regions (blue
button at the bottom of the page, on the left) and choose the species to
display.

If I choose human, this is what I get:

http://useast.ensembl.org/Sus_scrofa/Location/Multi?db=core;g=ENSSSCG00000000712;r=5:67005340-67078256;r1=12:6129631-6202547:-1;s1=Homo_sapiens

Can you get something similar to this at all?

However if you want a blue line connecting the human gene and its pig
counterpart, you do need to configure the page. More details on how to do
that should be in here:

http://www.ensembl.org/Help/View?id=225

Cheers,
Denise



> Hi Denise
> I appreciate your help. I have the same sort of problem as Joe.   I can
> bring up the gene but it never looks as good as the displays you guys
> show. Maybe its secreta of configuring the display.  Can you dump your
> configuration so we can match it?
>
> Thanks
> Ed
>
> -------- Original message --------
> From: Denise Carvalho-Silva <denise at ebi.ac.uk>
> Date: 09/26/2013  12:23 PM  (GMT-05:00)
> To: Ensembl developers list <dev at ensembl.org>
> Subject: Re: [ensembl-dev] Dev Digest, Vol 39, Issue 26
>
> Hi Joe,
>
> From this link you sent us, you can simply type in VWF in the Gene box and
> the page will automatically reload on the region where the porcine VWF is
> annotated.
>
>
>
> This is what you should see:
>
> http://www.ensembl.org/Sus_scrofa/Share/860487e6b4a640afe589cad3ede5422c114167076
>
> You can zoom in and out as you wish.
>
> More details on this view can be found here:
>
> http://www.ensembl.org/Help/View?id=225
>
> Hope it helps.
>
> Cheers,
> Denise
>
> On 26 Sep 2013, at 16:56, Joe Carl wrote:
>
>> > Are you looking to view two assemblies side-by-side as in our Region
>> Comparison view? > Here is pig vs human:
>> >   http://www.ensembl.org/Sus_scrofa/Share/3c8f1202250321838e0bc96d50392e89111929907\
>>
>>
>> I would love to know how to do this with a protein like VWF. What is the
>> general way to view a Pig gene next to a human gene in this kind of
>> browser view?  I can't seem to figure it out.
>>
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