[ensembl-dev] Missing genes from Chlamydomonas genome

Dan Staines dstaines at ebi.ac.uk
Tue Sep 17 08:51:43 BST 2013


On 2013-09-16 21:30, Sam Seaver wrote:
> Dear Ensembl,
> 
> I just found out that approximately 10% of the C. reinhardtii genome
> (v3) in the JGI database is missing from the C. reinhardtii genome
> installed at EnsemblPlants. 
> 
> Would anybody be able to explain this discrepancy for me?

Hi Sam,

This genome was loaded from the assembly and annotation submitted to 
INSDC:
http://www.ebi.ac.uk/ena/data/view/GCA_000002595.2
The most likely explanation is that the JGI version has been updated 
more recently but has not been resubmitted. However, we'll do some more 
digging to as there are some discrepancies about numbers of submitted 
scaffolds that we need to examine.

Thanks,

Dan.

-- 
Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/




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