[ensembl-dev] VEP Conservation Plugin error
Guillermo Marco Puche
guillermo.marco at sistemasgenomicos.com
Mon Oct 7 11:54:49 BST 2013
Hello,
I recently updated to ensembl73 database. I've found the following
problem with Conservation plugin:
Cannot find the core database of 'takifugu_rubripes' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.
Cannot find the core database of 'ciona_savignyi' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.
Cannot find the core database of 'macaca_mulatta' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.
Cannot find the core database of 'echinops_telfairi' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.
Cannot find the core database of 'gasterosteus_aculeatus' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.
(...)
-------------------- WARNING ----------------------
MSG: Unable to find method_link_species_set with method_link_type of Conservation_score and species_set_tag value of mammals
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 567
CALLED BY: vep_config/Plugins/Conservation.pm LINE: 82
Date (localtime) = Mon Oct 7 12:36:33 2013
Ensembl API version = 73
---------------------------------------------------
2013-10-07 12:36:33 - Failed to instantiate plugin Conservation: Failed to fetch MLSS for Conservation_score and mammals
Thank you.
Best regards,
Guillermo.
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