[ensembl-dev] Question regarding plugin behavior under fork conditions in VEP
Duarte Molha
duartemolha at gmail.com
Thu May 16 15:56:49 BST 2013
Dear Developers
I have created a simple plugin for VEP and adds to the annotation output
file a few fields from an input VCF (namely the score and the the genotype
fields for each processed individual.
It seems to work fine if I do not fork the process but using fork it dies
complaining about line
86.
If it isn't too much trouble could you take a look and give me some hints
why the $split_line[8] field might be undefined in the forked script? This
should always be there because it is the genotype field of a VCF file and
is included in all vcf lines.
Best regards
Duarte
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20130516/390028a4/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: qual_score_and_genotype.pm
Type: application/octet-stream
Size: 2723 bytes
Desc: not available
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20130516/390028a4/attachment.obj>
More information about the Dev
mailing list