[ensembl-dev] VEP not showing available cell types
Siddharth Sethi
s.sethi at har.mrc.ac.uk
Tue May 14 14:55:37 BST 2013
Hi,
I am trying to get the available cell types for Humans, but VEP is not printing the cell types when used -cell_type list
ERROR: cell type list not recognised; available cell types are:
This is command :
perl EnsemblAPI_71/ensembl-tools/scripts/variant_effect_predictor/variant_effect_predictor.pl --cache -species homo_sapiens --regulatory -cell_type list
Also, it prints : Database will be accessed when using --regulatory; consider using the complete cache containing regulatory data.
Can you please tell me what is the complete cache. I downloaded the cache files using the installer , so it should not access the database for regulatory.
Thank you.
Regards,
Sid
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