[ensembl-dev] database access

Dan Staines dstaines at ebi.ac.uk
Thu Mar 14 12:53:02 GMT 2013


On 03/12/2013 03:35 PM, Gary Duncan wrote:
> I was given a script that pulled data from ensembl its over 2 years old
> and it doesnt work did of the below change.

Sorry to hear you're having problems, but its not entirely clear to me 
what your script is trying to do and what the exact problem is. Can you 
summarise these for me and I'll see if we can help?



PS: One thing I'd note is the registry may take a little longer to load 
due to the increased number of species in Ensembl Bacteria. We have an 
optimisation for Bio::EnsEMBL::Registry to reduce this initial load time 
in the HEAD and branch-ensemblgenomes-17-70 branches of the main ensembl 

Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/

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