[ensembl-dev] variation API mouse phenotype question

[nconte at ebi.ac.uk]

> General question,
>
>  I have used the fetch by all variation method on my mouse variations with
> the phenotype feature adaptor to retrieve data from mouse variation
> objects and didn't retrieve any phenotype feature so far.(I use the same
> method for human variation and it retrieve pheno data).
> This is what I use to fetch phenotype data for Mouse using variation
> objects:
>
> my $mpf_adaptor = Bio::EnsEMBL::Registry->get_adaptor('mouse',
> 'variation', 'phenotypefeature');
> my $pfh = $mpf_adaptor->fetch_all_by_Variation($var);
> ... then print annotation about these $pfh..
>
>
> So I was wondering what kind of Mouse phenotype data can be accessed in
> variation API using phenotype feature object?
>  Is there phenotypic information from SNP, copy number variation, if yes
> coming form what source??thanks
> Nathalie
>
>