[ensembl-dev] Empty GMAF field in VEP (possible bug?)

Guillermo Marco Puche guillermo.marco at sistemasgenomicos.com
Tue Jun 4 12:10:56 BST 2013


Hello Will,

Try with this input:

https://github.com/guillermomarco/vep_plugins_71/blob/master/wrong_gmaf/wrong.vcf

Regards,
Guillermo.

On 06/04/2013 10:05 AM, Will McLaren wrote:
> Hi Guillermo,
>
> Can you provide some input that produces this problem?
>
> It works OK for me...
>
> Will
>
>
> On 3 June 2013 10:02, Guillermo Marco Puche 
> <guillermo.marco at sistemasgenomicos.com 
> <mailto:guillermo.marco at sistemasgenomicos.com>> wrote:
>
>     Hello Will,
>
>     Are you sure bug was fixed? I'm getting some ":,:" outputs. I'm
>     using tab delimited format not VCF as output.
>
>     Regards,
>     Guillermo.
>
>
>     On 05/22/2013 12:44 PM, Duarte Molha wrote:
>>
>>     On Wed, May 22, 2013 at 11:42 AM, Duarte Molha
>>     <duartemolha at gmail.com <mailto:duartemolha at gmail.com>> wrote:
>>
>>
>>     Sorry will... replied essentially saying the same thing you
>>     did... Should have refreshed my email client before sending :)
>>
>>     Thank you for the fix
>>
>>     =========================
>>          Duarte Miguel Paulo Molha
>>     http://about.me/duarte
>>     =========================
>>
>>

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