[ensembl-dev] Missing bacteria in ensembl genomes databases?

PATERSON Trevor trevor.paterson at roslin.ed.ac.uk
Mon Feb 18 17:40:49 GMT 2013

sorry to be a pain  Dan 
- but is there still one database missing?

I can only find 5838 bacteria

i.e. using select count(distinct species_id) from meta;

bacteria_2 v17 245 species	
bacteria_3 v17 244 species	
bacteria_4 v17 242 species	
bacteria_5 v17 242 species	
bacteria_6 v17 243 species	
bacteria_7 v17 243 species	
bacteria_8 v17 243 species	
bacteria_9 v17 244 species	
bacteria_10 v17 243 species	
bacteria_11 v17 240 species	
bacteria_12 v17 242 species	
bacteria_13 v17 243 species	
bacteria_14 v17 245 species	
bacteria_15 v17 244 species	
bacteria_16 v17 247 species	
bacteria_17 v17 244 species	
bacteria_18 v17 244 species	
bacteria_19 v17 245 species	
bacteria_20 v17 246 species	
bacteria_21 v17 244 species	
bacteria_22 v17 241 species	
bacteria_23 v17 245 species	
bacteria_24 v17 243 species	

Trevor Paterson PhD
trevor.paterson at roslin.ed.ac.uk
The Roslin Institute
Royal (Dick) School of Veterinary Studies
University of Edinburgh
Easter Bush
EH25 9RG
Scotland UK

phone +44 (0)131 651 9157


Please consider the environment before printing this e-mail
The University of Edinburgh is a charitable body, registered in Scotland with registration number SC005336
Disclaimer:This e-mail and any attachments are confidential and intended solely for the use of the recipient(s) to whom they are addressed. If you have received it in error, please destroy all copies and inform the sender. 

The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.

-----Original Message-----
From: Dan Staines [mailto:dstaines at ebi.ac.uk] 
Sent: 18 February 2013 14:44
To: dev at ensembl.org; PATERSON Trevor
Subject: Re: [ensembl-dev] Missing bacteria in ensembl genomes databases?

On 02/18/2013 01:13 PM, Dan Staines wrote:
> Hmm, odd - this does indeed seem to be the case though they were 
> definitely there at release time... Apologies, I'll reload these now.

OK, reloaded - let me know if you have any other problems.



Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/

More information about the Dev mailing list