[ensembl-dev] Missing bacteria in ensembl genomes databases?

PATERSON Trevor trevor.paterson at roslin.ed.ac.uk
Mon Feb 18 12:55:31 GMT 2013


the EnsemblGenomes/bacteria website lists 6013 species on http://bacteria.ensembl.org/info/about/species.html

but on examining the public mysql databases at mysql.ebi.ac.uk:4157

as far as I can tell  the 22 databases  [ bacteria_1( to 24) _collection_core_17_70_1 ] have details on only 5348 separate species

there would appear to be at least two databases missing

bacteria_3 _collection_core_17_70_1
bacteria_20 _collection_core_17_70_1

- or maybe I am failing to understand the collections properly

for example 'Acidilobus saccharovorans 345-15' Is listed on the website - but I am having difficulty finding it in the database



Trevor Paterson PhD
trevor.paterson at roslin.ed.ac.uk<mailto:trevor.paterson at roslin.ed.ac.uk>
The Roslin Institute
Royal (Dick) School of Veterinary Studies
University of Edinburgh
Easter Bush
EH25 9RG
Scotland UK

phone +44 (0)131 651 9157


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