[ensembl-dev] GERP_CONSERVATION_SCORE

cj5 at sanger.ac.uk cj5 at sanger.ac.uk
Thu Feb 7 17:00:16 GMT 2013


Hi

The example script for getting gerp scores

http://www.ensembl.org/Help/Faq?id=221

seems to have beem removed

I had an old api script which did this using

 my $mlss_adaptor = $reg->get_adaptor("Multi", "compara", "MethodLinkSpeciesSet");
 $mlss_adaptor->fetch_by_method_link_type_species_set_name("GERP_CONSERVATION_SCORE", "mammals");'.

But this produces an error in version 70,

"Can't call method "fetch_by_method_link_type_species_set_name" on an undefined value

So how do I get GERP scores using the version 70 API?

Thanks
Chris Joyce
Sanger Institute





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