[ensembl-dev] Getting GFF3 files from Ensembl MySQL database.

[Paul Linehan]

Hi Dan,


> Not sure how well this meets your needs but we (Ensembl Genomes) actually
> provide dumps of GFF3 files on our FTP site e.g.
> ftp://ftp.ensemblgenomes.org/pub/current/metazoa/gff3/caenorhabditis_elegans/
> You can also export data for regions of genome in a variety of formats
> including GFF3 using our REST server e.g.
> http://beta.rest.ensemblgenomes.org/documentation/info/feature_region


<Paul smacks forehead in Homer Simpsonesque manner, crying "Doh"...>


This looks to be just what I wanted - how did I miss that? I wasn't
going through
Ensembl genomes though - just Ensembl. Lesson for next time!


> Hope this helps!


Great - thanks for that!


Paul...


> Dan.

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linehanp at tcd.ie

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