[ensembl-dev] rep 74 error

Wed Dec 11 13:09:09 GMT 2013

Dear developers list,

I have been running the VEP script version 74 in the following way:

 /tools/bin/perl /home/projects/pr_46298/naspeh/tools/variant_effect_predictor/variant_effect_predictor/variant_effect_predictor.pl --cache --dir_cache /home/projects/pr_46298/naspeh/tools/variant_effect_predictor/variant_effect_predictor/cache_dir/ -i $FILE -o $OUTFILE --sift p --polyphen p --humdiv --allele_number --numbers --symbol --protein --domains --regulatory --gmaf --maf_1kg --maf_esp --pubmed --vcf --plugin Conservation --force_overwrite

but receives the error:

"%COL_DESCS" is not exported by the Bio::EnsEMBL::Variation::Utils::VEP module

Best,
Natasja

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