[ensembl-dev] pseudogenes in ensembl bacteria

Dan Staines dstaines at ebi.ac.uk
Wed Aug 21 15:40:24 BST 2013

On 08/21/2013 03:37 PM, Adam Witney wrote:
> Thanks for that Dan. Are the pseudogene labels stored anywhere in the
> database? ie the label HI_0006 in haemophilus_influenzae_rd_kw20.fa is
> not present, but I guess it is one of the gene_feature's at the bottom.

No, unfortunately they're not - these are the same as the locus_tags 
which I mentioned in my mail above. If I'm able to reload these genes 
using the updated pipeline, its possible that I'll be able to generate a 
lookup list for you if thats a help in the short term.


Dan Staines, PhD
Technical Coordinator, Ensembl Genomes
European Bioinformatics Institute (EMBL-EBI)

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