[ensembl-dev] Fwd: Re: Ensembl plants miss a table

[Nick Langridge]

Hi Daniel,

It looks like you are using Ensembl Genomes version 19-72.
Please can you check that all your code is up-to-date, then try
restarting the server.
E.g.

$ cvs up -r branch-ensembl-72 ensembl ensembl-* modules perl public-plugins
$ cvs up -r branch-ensemblgenomes-19-72 eg-plugins/common/
eg-plugins/plants/
$ rm conf/packed/* # remove cached configs
$ ctrl_scripts/restart_server -r

If this doesn't resolve your problem, please let us know, and include a
copy of the server startup output in your reply.

Best regards,
Nick






On 02/08/2013 17:10, Dan Staines wrote:
> One for you chaps. I suspect his compara checkout is out of date.
>
>
> -------- Original Message --------
> Subject: 	Re: [ensembl-dev] Ensembl plants miss a table
> Date: 	Sat, 3 Aug 2013 00:08:17 +0800
> From: 	陈岗 <danielchen06 at gmail.com>
> To: 	Dan Staines <dstaines at ebi.ac.uk>
>
>
>
> Hi Dan
>
> The error occurs at
>
> http://172.16.10.16:8902/Zea_mays/Gene/Compara_Tree?g=GRMZM2G020898;r=2:234432121-234436077;t=GRMZM2G020898_T01
>
> gene tree image
>
> Best
>
> Daniel
>
>
> 2013/8/2 Dan Staines <dstaines at ebi.ac.uk <mailto:dstaines at ebi.ac.uk>>
>
>     Hi,
>
>     I  suspect that this is a piece of SQL that has not been updated to
>     reflect recent changes to the compara schema. Could you give us a
>     little more information about where and when you see this error?
>
>     Many thanks,
>
>     Dan.
>
>     --
>     Dan Staines, PhD
>     Technical Coordinator, Ensembl Genomes
>     European Bioinformatics Institute (EMBL-EBI)
>     http://www.ebi.ac.uk/
>     http://www.ensemblgenomes.org/
>
>
>
>