[ensembl-dev] Ensembl plants miss a table

陈岗 danielchen06 at gmail.com
Fri Aug 2 04:51:35 BST 2013

Hi Ensembl developers

Our plants mirror misses a database
which doesn't exist on your ftp server.

MSG: Cannot run '
	select dbprimary_acc,count(*) as cnt from gene_tree_root r
	join gene_tree_node n using (root_id) join gene_tree_member gm using (node_id)	
	join member m using (member_id)
	join member_xref mg on (m.gene_member_id=mg.member_id)	
	where r.root_id=? and mg.db_name=?
	group by dbprimary_acc,db_name order by cnt desc, dbprimary_acc asc
	' with params '261020 GO' due to error: DBD::mysql::st execute failed: Table
	... 'ensembl_compara_plants_19_72.gene_tree_member' doesn't exist at
	... /usr/local/ensembl_plants/ensembl/modules/Bio/EnsEMBL/Utils/SqlHelper.pm
line 1003.

Please check

Thanks million.

Gang Chen
Taicang Institute For Life Science Information
Address: A2/162, Renmin South Road, Taicang, 215400, Jiangsu Province,
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