[ensembl-dev] Fwd: Dense SNP region in Mus_musculus.gvf?
Zhaojun Zhang
zzj at cs.unc.edu
Mon Apr 22 20:17:43 BST 2013
Hi,
I am working on the GVF database of Ensembl, recently. I downloaded the
newest version of GVF file from the website.
And I found out there is chromosome 14:19415857-19418930 is a very dense
SNV region, and also several SNVs are located at the exact same location.
Is it normal?
You could use "head -n 28042193 Mus_musculus.gvf | tail -n 100" to check
out the region.
However, I could not see any variants in resequencing query:
http://useast.ensembl.org/Mus_musculus/Location/SequenceAlignment?db=core;g=ENSMUSG00000095280;r=14:19415857-19418930;t=ENSMUST00000177817
Best,
Zhaojun.
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