[ensembl-dev] Fwd: Dense SNP region in Mus_musculus.gvf?

Zhaojun Zhang zzj at cs.unc.edu
Mon Apr 22 20:17:43 BST 2013


Hi,

I am working on the GVF database of Ensembl, recently. I downloaded the
newest version of GVF file from the website.

And I found out there is  chromosome 14:19415857-19418930 is a very dense
SNV region, and also several SNVs are located at the exact same location.
Is it normal?

You could use "head -n 28042193 Mus_musculus.gvf | tail -n 100" to check
out the region.

However, I could not see any variants in resequencing query:

http://useast.ensembl.org/Mus_musculus/Location/SequenceAlignment?db=core;g=ENSMUSG00000095280;r=14:19415857-19418930;t=ENSMUST00000177817

Best,
Zhaojun.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20130422/3f2b2290/attachment.html>


More information about the Dev mailing list