[ensembl-dev] Ensemble api tutorial
enrico1970 at yahoo.com
enrico1970 at yahoo.com
Mon Oct 8 18:29:16 BST 2012
Dear Support,
I am executing the code to "get a list of all Ensemble
databases installed on a given database host" from http://www.ensembl.org/info/docs/api/core/core_tutorial.html
but when I run the code it does not return any database or any error.
Please find the code below.
Thanks,
Enrico
use Bio::EnsEMBL::Registry;
my $registry = 'Bio::EnsEMBL::Registry';
$registry->load_registry_from_db(
-host => 'ensembldb.ensembl.org', # alternatively 'useastdb.ensembl.org'
-user => 'anonymous'
);
my @db_adaptors = @{ $registry->get_all_DBAdaptors() };
foreach my $db_adaptor (@db_adaptors) {
my $db_connection = $db_adaptor->dbc();
printf(
"species/group\t%s/%s\ndatabase\t%s\nhost:port\t%s:%s\n\n",
$db_adaptor->species(), $db_adaptor->group(),
$db_connection->dbname(), $db_connection->host(),
$db_connection->port()
);
}
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