[ensembl-dev] Add a new DRM systeme to run Ensembl

[Thibaut Hourlier]

Hi Ismael,
Yes, that should be enough.
You will have to implement these methods:
   construct_command_line
   open_command_line
   copy_output
   delete_output
   job_stats
You probably need to override:
   temp_filename

You can use the LSF module as template.

But you might have to tweak the RuleManager.pm and the Job.pm module.
I have made little changes to the Job.pm, BatchSubmission.pm, LSF.pm and 
SGE_GridEngine_v6.pm modules, so you will have to check that they are 
up-to-date.

Regards,
Thibaut

On 26/03/12 13:26, ismael padioleau wrote:
> Hello,
>
> I would like to run the Ensembl pipeline on a system using Slurm 
> instead of LSF. I would like to know if creating a new module in the 
> directory 'BatchSubmission' and refer to it in 'BatchQueue' is 
> sufficient or if it will required other modifications.
>
> Regards,
>
> Ismael Padioelau
>