[ensembl-dev] GTF for RNA-seq gene models?

Julien Roux julien.roux at unil.ch
Mon Jul 23 18:00:26 BST 2012

Hi all,
I am wondering if a GTF/GFF file would be available for the gene models 
derived from RNA-seq of 16 Bodymap tissues?
I have found the script dump_transcripts.pl 
but it outputs the RNA-seq transcripts in FASTA format, without any 
information on the splice junctions and exon coordinates...
Thanks for your tips

Julien Roux, PhD
Gilad lab, Department of Human Genetics, University of Chicago
920 East 58th Street, CLSC 317, Chicago, IL 60637, USA
tel: +1-773-834-1984   fax: +1-773-834-8470

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