[ensembl-dev] GTF for RNA-seq gene models?
Julien Roux
julien.roux at unil.ch
Mon Jul 23 18:00:26 BST 2012
Hi all,
I am wondering if a GTF/GFF file would be available for the gene models
derived from RNA-seq of 16 Bodymap tissues?
I have found the script dump_transcripts.pl
(http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/ensembl-pipeline/scripts/examples/?root=ensembl),
but it outputs the RNA-seq transcripts in FASTA format, without any
information on the splice junctions and exon coordinates...
Thanks for your tips
Julien
--
Julien Roux, PhD
Gilad lab, Department of Human Genetics, University of Chicago
http://giladlab.uchicago.edu/
920 East 58th Street, CLSC 317, Chicago, IL 60637, USA
tel: +1-773-834-1984 fax: +1-773-834-8470
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