[ensembl-dev] EFG array mapping environment probe2transcript fails looking for transcript_stable_id table

Oliver, Gavin gavin.oliver at almacgroup.com
Tue Jul 10 15:33:14 BST 2012



I am trying to run an annotation of Affy_UTR arrays using Ensembl
version 67.  Unfortunately the process fails when the
probe2transcript.pl script dies looking for the transcript_stable_id
table (as part of the fetch_by_stable_id method).  It looks like this
table no longer exists in the core database schema.  Is the
probe2transcript script out-of-date?  







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