[ensembl-dev] protein tree id and tagvalue

Moretti Sébastien sebastien.moretti at unil.ch
Thu Jul 5 15:07:36 BST 2012


> On the protein-tree side, there are no trees with only 1 sequence. There
> are between 4,000 and 5,000 trees with 2 sequences.
> With respect to the database, they contain almost the same information
> as larger trees: multiple alignment, node / tree tags, homologies, etc
> The main difference is that we don't run treebest on them (treebest
> needs at least 3 sequences). As a consequence, we don't have any branch
> lengths on these trees
> Matthieu
Sébastien Moretti
SIB Vital-IT EMBnet, Quartier Sorge - Genopode
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4079/4221
http://www.vital-it.ch/ http://myhits.vital-it.ch/

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