[ensembl-dev] variation effect pipeline module bug?

[Sharon Wei]

Hi Ensembl Variation Developers,

I think the following code in BaseVariationProcess needs an eval to 
catch the exceptions. Otherwise the pipeline will quit before gets its 
chance to load the reg_file.
This is ensembl-variation branch-ensembl-65 code base.

[weix at blade170 Pipeline]$ cvs diff BaseVariationProcess.pm
Index: BaseVariationProcess.pm
===================================================================
RCS file: 
/cvsroot/ensembl/ensembl-variation/modules/Bio/EnsEMBL/Variation/Pipeline/BaseVariationProcess.pm,v
retrieving revision 1.4
diff -r1.4 BaseVariationProcess.pm

80c80,82
<     my $dba = Bio::EnsEMBL::Registry->get_DBAdaptor($species, $group);
---
 >     my $dba;
 >
 >     eval{$dba = Bio::EnsEMBL::Registry->get_DBAdaptor($species, 
$group)};

Sharon