[ensembl-dev] Transcripts with stop codon ?

[Michael Paulini]

On 01/02/12 13:55, Moretti Sébastien wrote:
> Hi
>
> I have just noticed that some transcripts have stop codon(s) in their 
> sequence. E.g. ENSCJAT00000065209
>
> Is it normal ?
>
>
> These stop codons and, more problematic, the "fake" codons next after 
> the stop are included in compara alignments.
>
you mean translations?
Due to the case that the translation also doesn't have a start, I would 
put that down as a prediction artefact, similar to what you can see on a 
lot of low-coverage gene sets where you get fragments of genes and 
in-frame-stops.

M