[ensembl-dev] Transcripts with stop codon ?

Michael Paulini mh6 at sanger.ac.uk
Wed Feb 1 14:32:55 GMT 2012

On 01/02/12 13:55, Moretti Sébastien wrote:
> Hi
> I have just noticed that some transcripts have stop codon(s) in their 
> sequence. E.g. ENSCJAT00000065209
> Is it normal ?
> These stop codons and, more problematic, the "fake" codons next after 
> the stop are included in compara alignments.
you mean translations?
Due to the case that the translation also doesn't have a start, I would 
put that down as a prediction artefact, similar to what you can see on a 
lot of low-coverage gene sets where you get fragments of genes and 


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