[ensembl-dev] EnsemblGenomes mirror error

陈岗 danielchen06 at gmail.com
Fri Dec 28 09:38:04 GMT 2012


Hi All

Our ensemblGenomes mirror has an error, I updated software and database,
both of them are 16 (69).

Child initialised:    3301 2012-12-28 17:28:09
Child initialised:    3302 2012-12-28 17:28:09
For ensembl_compara_bacteria_16_69 there is a difference in the software
release (69) and the database release (68). You should update one of these
to ensure that your script does not crash.
SCRIPT: ensembl-1     3247 2012-12-28 17:28:09
/e_coli_k12/Component/Gene/Web/GeneSummary?db=core;g=EBESCG00000000947;r=Chromosome:4233929-4234171
ENDSCR: ensembl-1     3247 2012-12-28 17:28:09
/e_coli_k12/Component/Gene/Web/GeneSummary?db=core;g=EBESCG00000000947;r=Chromosome:4233929-4234171
     0.001
SCRIPT: ensembl-1     3258 2012-12-28 17:28:10
/e_coli_k12/Component/Gene/Web/TranscriptsImage?db=core;g=EBESCG00000000947;r=Chromosome:4233929-4234171
ENDSCR: ensembl-1     3258 2012-12-28 17:28:10
/e_coli_k12/Component/Gene/Web/TranscriptsImage?db=core;g=EBESCG00000000947;r=Chromosome:4233929-4234171
     0.001
[Fri Dec 28 17:28:10 2012] [error] [client 172.16.6.22] Can't locate object
method "feature_Slice" via package "Bio::EnsEMBL::ArchiveStableId" at
/usr/local/ensembl_bacteria/eg-plugins/bacteria/modules/EnsEMBL/Web/Object/Gene.pm
line 91.\n, referer:
http://172.16.10.16:8899/e_coli_k12/Search/Results?species=e_coli_k12;idx=;q=gene%20yjbE

-- 
Gang Chen
TILSI
Taicang Institute For Life Science Information
Address: A2/162, Renmin South Road, Taicang, 215400, Jiangsu Province,
P.R.China
Phone:(+86)512-82782588
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